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Biochemistry 37, 15050-15056. A novel Arg362Ser mutation in the sterol 27-hydroxylase gene (CYP27): Its effects on pre-mRNA splicing and enzyme activity. 1998

Chen, W., Kubota, S., Ujike, H., Ishihara, T., Seyama, Y.

Notes: A minigene was constructed with five exons and four introns from exons 5-9 of the CYP27 gene. The 2111bp product was generated with primers containing a start codon and a stop codon. The product was directly cloned into the pTARGET™ Mammalian expression vector and transfected into COS-1cells. RNA was isolated from these cells and RT-PCR was performed to amplify the spliced product. This assay could distinguish between normal splicing of the third intron and aberrant splicing of due to the Arg362Ser mutation. The proteins produced by the normal and mutant minigenes were also assessed by immunoblotting. (1333)

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Am. J. Hum. Genet. 62, 70-76. A presenilin-1 truncating mutation is present in two cases with autopsy- confirmed early-onset Alzheimer disease. 1998

Tysoe, C., Whittaker, J., Xuereb, J., Cairns, N.J , Cruts, M., Van Broeckhoven, C., Wilcock, G., Rubinsztein, D.C.

Notes: PCR products were purified by Wizard® PCR Preps DNA Purification System and sequenced by use of the fmol® DNA Cycle Sequencing Systems. (0247)

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J. Lipid Res. 39, 509-517. Alternative pre-mRNA splicing of the sterol 27-hydroxylase gene (CYP27) caused by a G to A mutation at the last nucleotide of exon 6 in a patient with cerebrotendinous xanthomatosis 1998

Chen, W., Kubota, S., Seyama, Y.

Notes: To confirm the G to A mutation caused alternative splicing, a minigene containing exon 6 with or without the G to A mutation was amplified. The 2111bp minigene was T/A cloned into the pTargeT™ Mammalian Expression Vector and transfected into COS cells. The RNA was isolated from the transfected cells and analyzed by RT-PCR. The G to A mutation resulted in a truncated RT-PCR product. To confirm the mutation would cause a truncated, inactive protein. A cDNA was constructed that would be the result of the alternative splicing and subcloned into the pTargeT™ Vector. COS cells expressing the mutant had no detectable sterol 27 hydroxylase activity. (1330)

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J. Mol. Neurosci. 10, 181-192. Amyloid beta-peptide (1-40)-mediated oxidative stress in cultured hippocampal neurons. Protein carbonyl formation, CK BB expression, and the level of Cu, Zn, and Mn SOD mRNA. 1998

Aksenov, M.Y., Aksenova, M.V., Markesbery, W.R., Butterfield, D.A.

Notes: The authors used RQ1 RNase-Free DNase to remove contaminating genomic DNA from total RNA samples. Cu, Zn, and MN SOD mRNA sequences were amplified from hippocampal neuronal RNA using the Access RT-PCR System. (2218)

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Am. J. Hum. Genet. 63, 1025-1035. An analysis of phenotypic variation in the familial cancer syndrome von Hippel-Lindau disease: evidence for modifier effects. 1998

Webster, A. R. , Richards, F. M. , MacRonald, F. E. , Moore, A. T. , Maher, E. R.

Notes: PCR was used to amplify the VHL coding and promoter region in six fragments from genomic DNA, and SSCP analysis was performed to detect intragenic mutations. Fragments producing an aberrant SSCP band were purified using the Wizard® PCR Preps DNA Purification System and subsequentially sequenced. (0176)

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Arterioscler. Thromb. Vasc. Biol. 18, 884-893. An animal model to study local oxidation of LDL and its biological effects in the arterial wall. 1998

Calara, F., Dimayuga, P., Niemann, A., Thyberg, J., Diczfalusy, U., Witztum, J.L., Palinski, W., Shah, P.K., Cercek, B., Nilsson, J., Regnström, J.

Notes: Total RNA was isolated from rat aorta and iliac arteries with the RNAgents® Total RNA Isolation System. The isolated RNA was used for RT-PCR. (1379)

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J. Virol. 72, 2589-2599. Analysis of hepatitis C virus-inoculated chimpanzees reveals unexpected clinical profiles. 1998

Bassett, S.E., Brasky, K.M. and Lanford, R.E.

Notes: The Access RT-PCR System was used to determine the presence of hepatitis C virus RNA in chimpanzee serum. (1465)

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Plant Cell 10, 297-308. a-Tubulin Missense Mutations Correlate with Antimicrotubule Drug Resistance in Eleusine indica. 1998

Yamamoto, E., Zeng, L. and Baird, W.

Notes: The pGEM® -T Easy Vector Systems, Wizard® PCR Preps DNA Purification System and Wizard® Plus Minipreps DNA Purification Systems were used in this study. (1959)

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J. Biol. Chem. 273, 18826-18834. Binding of Ca2+ and Zn2+ to human nuclear S100A2 and mutant proteins. 1998

Franz, C., Durussel, I., Cox, J.A., Schäfer, B.W., Heizmann, C.W.

Notes: The S100A2 protein cDNA was subcloned into the pGEMEX®-2 Vector and expressed in BL21(DE3)pLysS E.coli cells. The protein was purified by a referenced method. (1173)

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J. Biol. Chem. 273, 11556-11562. cDNA cloning and expression of bovine UDP-N-acetylglucosamine: alpha1,3-D-mannoside beta1,4-N-acetyl glucosaminyltransferase IV. 1998

Minowa, M.T., Oguri, S., Yoshida, A., Hara, T., Iwamatsu, A., Ikenaga, H. , Takeuchi, M.

Notes: The Access RT-PCR System was used to compare the abundance of GnT-IV mRNA in various bovine tissues. (0694)

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J. Biol. Chem. 273, 27420-27429. Characterization of the muring fatty acid transport protein gene and its insulin response sequence. 1998

Hui, T.Y., Frohnert, B.I., Smith, A.J., Schaffer, J.E., Bernlohr, D.A.

Notes: Luciferase reporter constructs were cotransfected into 3T3-L1 preadipocytes with the pRL-CMV Vector at a 25:1 ratio and luciferase activities were determined with the Dual-Luciferase® Reporter Assay System. RT-PCR was accomplished with AMV Reverse Transcriptase and Taq DNA Polymerase. RNase Protection Assay were performed with the aid of the RNase ONE™ Ribonuclease. (0988)

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Proc. Natl. Acad. Sci. USA 95, 15803-15808. Cloning of the cDNA encoding the urotensin II precursor in frog and human reveals intense expression of the urotensin II gene in motoneurons of the spinal cord. 1998

Coulouarn, Y. , Lihrmann, I. , Jegou, S. , Anouar, Y. , Tostivint, H. , Beauvillain, J. C. , Conlon, J. M. , Bern, H. A. , Vaudry, H.

Notes: In this paper, Tfl DNA polymerase was used for two-step RT-PCR. The amplified fragments were cloned into the pGEM®-T Vector. Promega's Terminal Deoxynucleotidyl Transferase (TdT) was used to end label specific oligos for screening a frog brain cDNA library. T7 and T3 RNA polymerases were used to make digoxigenin labeled riboprobes for in situ hybridization. (1281)

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Appl. Environ. Microbiol. 64, 1147-1152. Common elements regulating gene expression in temperate and lytic bacteriophages of Lactococcus species. 1998

Walker, S. A. , Dombroski, C. S. , Klaenhammer, T. R.

Notes: The pGEM®-T Easy Vector was used to clone PCR products amplified from the prophage inserts of various lysogenic Lactococcus strains. (0193)

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Infect. Immun. 66, 656-663. Comparative analysis of Haemophilus influenzae hifA (pilin) genes 1998

Clemans, D.L., Marrs, C.F., Patel, M., Duncan, M., Gilsdorf, J.R.

Notes: The Wizard® Genomic DNA Purification Kit was used to purify genomic DNA from Haemophilus influenzae. The isolated DNA was used for amplification. (1310)

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Genetics 148, 815-825. Conserved regions of the timeless (tim) clock gene in Drosophila analyzed through phylogenetic and functional studies. 1998

Ousley, A., Zafarullah, K., Chen, Y., Emerson, M., Hickman, L., Sehgal, A.

Notes: For the RT-PCR experiment, total RNA isolated from fly heads was reverse transcribed by Promega AMV-RT and then the cDNA was amplified by Promega Taq DNA polymerase. (0574)

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Genetics 149, 1407-1426. Courtship and visual defects of cacophony mutants reveal functional complexity of a calcium-channel alpha1 subunit in Drosophila. 1998

Smith, L. A., Peixoto, A. A., Kramer, E. M., Villella, A., Hall, J.C.

Notes: Total RNA was reverse-transcribed with random hexamer primers and AMV Reverse Transcriptase and then amplified for sequence analysis by nested PCR. Poly(A)+ RNA was purified with the PolyATtract® mRNA Isolation System. (0382)

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Nature 391, 203-206. Crystal structure of the bacterial cell-division protein FtsZ. 1998

Löwe, J., Amos, L.A.

Notes: Genomic DNA was isolated from Methanococcus jannaschii using the Wizard® Genomic DNA Purification Kit. The isolated DNA was used for PCR and eventually expression of the FtsZ protein. (0746)

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Biochemistry 37, 10134-10143. DNaseY: a rat DNaseI-like gene coding for a constitutively expressed chromatin-bound endonuclease. 1998

Liu, Q.Y., Pandey, S., Singh, R.K., Lin, W., Ribecco, M., Borowy Borowski, H., Smith, B., LeBlanc, J., Walker, P.R., Sikorska, M.

Notes: The authors used the PolyATtract® mRNA Isolation System IV to isolate mRNA from total RNA and the Wizard® PCR Preps DNA Purification Resin to purify a first-strand cDNA synthesis product.  TNT® T7 Coupled in vitro Transcription/Translation Reticulocyte Lysate System was used to synthesize radiolabeled DNaseY. And to test for signal peptide function they added Canine Pancreatic Microsomal Membranes (CMMs). (0779)

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J. Clin. Microbiol. 36, 1741-1745. Evaluation of a commercially available reverse transcription-PCR assay for diagnosis of enteroviral infection in archival and prospectively collected cerebrospinal fluid specimens 1998

Pozo, F., Casas, I., Tenorio, A., Trallero, G., Echevarria, J.M.

Notes: The authors compared a commercially available enterovirus-specific RT-PCR kit with a kit of their own design. Their 'in-house' RT-PCR system used the Access RT-PCR System to amplify enterovirus sequences from cerebral spinal fluid extracts followed by nested-PCR for final amplification of the target. Both the commercial system and the 'in-house' system were adequate for amplification of enterovirus sequences from CSF of infected individuals. Other, more time-consuming assays were performed to verify the results from the RT-PCR tests. (0545)

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Genetics 149, 479-490. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen. 1998

Hoeren, F.U., Dolferus, R., Wu, Y., Peacock, W.J., Dennis, E.S.

Notes: Quantitative RT-PCR was carried out using 1µg total RNA from Arabidopsis using Access RT-PCR System. Samples were taken during the PCR reaction after 5, 10, 15, and 25 cycles and loaded onto agarose gels. Gels were treated for Southern blot hybridization, and filters were hybridized using the AtMYB2 cDNA. Linearity of signal strength was verified using phosphorimaging system quantifications. (1048)

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Proc. Natl. Acad. Sci. USA 95, 8147-8152. Evolution of the avian sex chromosomes from an ancestral pair of autosomes. 1998

Fridolfsson, A.-K., Cheng, H., Copeland, N.G., Jenkins, N.A., Liu, H.-C., Raudsepp, T., Woodage, T., Chowdhary, B., Halverson, J., Ellegren, H.

Notes: The Access RT-PCR System was used to amplify two portions of the CHD1 gene product from ostrich poly A+ RNA. The amplification products were gel purified and sequenced. The sequence obtained was compared to that of the human and murine CHD1 and Chicken CHD1Z and CHD1W sequences. (1175)

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J. Invest. Dermatol. 111, 1053–1057. Expression of interleukin-12 is increased in psoriatic skin. 1998

Yawalker, N., Karlen, S., Hunger, R., Brand, C.U. and Braathen, L.R.

Notes: The SV Total RNA Isolation System was used to isolate total RNA from normal skin, psoriatic skin, H-128 small cell lung carcinoma cells and peripheral blood mononuclear cells. The isolated RNA was used for RT-PCR performed with the Access RT-PCR System. (0107)

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Am. J. Hum. Genet. 63, 1363-1375. Familial porphyria cutanea tarda: characterization of seven novel uroporphyrinogen decarboxylase mutations and frequency of common hemochromatosis alleles. 1998

Mendez, M., Sorkin, L., Rossetti, M.V., Astrin, K.H., del, C., Batlle, A.M., Parera, V.E., Aizencang, G. and Desnick, R.J.

Notes: The fmol® DNA Cycle Sequencing System was used in this study. (0679)

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Genetics 149, 1081-1088. Gene silencing by DNA methylation and dual inheritance in Chinese hamster ovary cells. 1998

Paulin, R. P., Ho, T., Balzer, H. J., Holliday, R.

Notes: Bisulphite-treated DNA was purified using the Wizard® DNA Clean-Up System prior to PCR. The amplified DNA was then cleaned using a Wizard® PCR Preps DNA Purification System prior to cloning and the cloned DNAs were sequenced using the fmol® DNA Cycle Sequencing System. (0001)

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J. Biol. Chem. 273, 26426-26431. Genetic probing of the stalk segments associated with M2 and M3 of the plasma membrane H+-ATPase from Saccharomyces cerevisiae. 1998

Soteropoulos, P., Perlin, D.S.

Notes: The Wizard® Genomic DNA Purification Kit was used to isolate genomic DNA from 3ml S. cerevisiae cultures grown 18-20 hours in YPD broth. The isolated DNA was used for PCR amplification of a 3.5kb segment. The amplimer was purified using the Wizard® PCR Preps System. (0356)

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