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Genetics 155, 1149-1160. RNA editing of the Drosophila para Na+ channel transcript: Evolutionary conservation and developmental regulation. 2000

Hanrahan, C.J., Palladino, M.J., Ganetsky, B. and Reenan, R.A.

Notes: Genomic DNA was extracted from 100 Drosophila melanogaster and 100 Drosophila virilis using the Wizard® Genomic DNA Purification Kit.  The isolated genomic DNA was used for PCR amplification and direct sequencing.  RT-PCR was also performed in the presence of RNasin® Ribonuclease Inhibitor and cloned amplimers were purified with the Wizard® Plus Minipreps DNA Purification System prior to fluorescent sequencing. (2505)

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Am. J. Pathol. 156, 939–950. Semaphorin SEMA3F localization in malignant human lung and cell lines : A suggested role in cell adhesion and cell migration. 2000

Brambilla, E., Constantin, B., Drabkin, H. and Roche, J.

Notes: The SV Total RNA Isolation System was used to isolate RNA from various lung cancer cell lines. The isolated RNA was used for RT-PCR and quantitative RT-PCR. (2161)

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Development 127, 5379-89. Signaling and transcriptional regulation in the neural crest-derived melanocyte lineage: Interactions between KIT and MITF. 2000

Hou, L., Panthier, J.J., and Arnheiter, H.

Notes: Knockout mice deficient in the tyrosine kinase receptor Kit, which is critical for the development of melanocytes from neural crest-derived precursor cells, were generated. The Kit encoding region was replaced in these mice with the LacZ gene, a convenient marker for Kit expression. Kit-LacZ homozygous mices were identified by PCR using Promega's Taq DNA Polymerase to amplify a 800bp band corresponding to LacZ and to confirm the absence of the 148bp band of Kit. Primary neural crest cell cultures from knockout mouse embryos were immunostained with the Anti-β-Galactosidase mAb to localize Kit expression. Cells were fixed in 4% paraformaldhyde and permeabilized with 0.1% Triton®-X-100 prior to immunostaining. (2422)

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Clin. Can. Res. 6, 3823–3826. Telomerase RNA as a detection marker in the serum of breast cancer patients 2000

Chen, X.Q., Bonnefoi, H., Pelte, M.F., Lyautey, J., Lederrey, C., Movarekhi, S., Schaeffer, P., Mulcahy, H.E., Meyer, P., Stroun, M. and Anker, P.

Notes: Total RNA was isolated from human serum by combining 100µl of serum with 175µl of SV RNA Lysis Buffer. Only fresh or once-frozen serum was used. The SV Total RNA Isolation System was also used to isolate total RNA from tumor tissue. The rest of the protocol was followed as directed in the technical manual. The quantities of RNA isolated from serum were too low to quantitate so 1µl or 5µl of the isolated RNA was used in RT-PCR to analyze RNA content. (2160)

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Hum. Gene Ther. 11, 247-261. The CXC chemokine, monokine-induced by interferon-gamma, inhibits non-small cell lung carcinoma tumor growth and metastasis 2000

Addison, C.L., Arenberg, D.A., Morris, S.B., Xue, Y.-Y., Burdick, M.D., Mulligan, M.S., Iannettoni, M.D. and Strieter, R.M.

Notes: The pTARGET™ Mammalian Expression Vector was used to clone and express MIG (monokine-induced by Interferon-gamma) and IP-10 (interferon-inducible protein 10) in A549 human adenocarcinoma cells. Stable transfectants were obtained through G418 selection. (2058)

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Genetics 154, 1115-1123. Three subfamilies of pheromone and receptor genes generate multiple B mating specificities in the mushroom Coprinus cinereus. 2000

Halsalla, J., Milnera, M., Casseltona, L.

Notes: Poly(A)+ RNA was purified from total RNA by the PolyATtract® mRNA Isolation System. PCR products were purified by agarose gel electrophoresis and were cloned into pGEM®-T and pGEM®-T Easy Vector. Genes were obtained by RT-PCR using the Access RT-PCR System. (1097)

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Am. J. Hum. Genet. 66, 393-401. Toward a survey of somatic mutation of the NF1 gene in benign neurofibromas of patients with neurofibromatosis type 1. 2000

Eisenbarth, I. , Beyer, K. , Krone, W. , Assum, G.

Notes: PCR products were used in TNT® T7 Coupled Reticulocyte Lysate System. (1215)

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Infect. Immun. 68, 3368–3376. Transcriptional Organization and Function of Invasion Genes within Salmonella enterica Serovar Typhimurium Pathogenicity Island 1, Including the prgH, prgI, prgJ, prgK, orgA, orgB, and orgC Genes 2000

Klein, J.R., Fahlen, T.F., and Jones, B.D.

Notes: Total RNA was isolated from a virulent strain of Salmonella enterica, SL1344 using the SV Total RNA Isolation System. The Access RT-PCR System was used to characterize the transcriptional organization of the prg operon. The pgrH gene was amplified by RT-PCR and cloned into the pGEM®-T vector (2305)

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J. Biol. Chem. 275, 28722–28730. TWIK-2, an inactivating 2P domain K+ channel. 2000

Patel, A.J., Maingret, F., Magnone, V., Fosset, M., Lazdunski, M. and Honore, E.

Notes: The SV Total RNA Isolation System was used to isolate total RNA from various rat tissues. The isolated RNA was used for RT-PCR. The authors also use a derivative of the pCI Vector called pCI-IRES-CD8 to express the TWIK protein specifically in COS cells. (2179)

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J. Gen. Virol. 80, 1231-1240. A highly pathogenic simian/human immunodeficiency virus with genetic changes in cynomolgus monkey 1999

Shinohara, K., sakai, K., ando, S., Ami, Y., Yoshino, N., Takahashi, E., Someya, K., Suzaki, Y., Makasone, T., Sasaki, Y., Kaizu, M., Lu, Y., Honda, M.

Notes: Poly A+ RNA was isolated from infected cynomolgus monkey plasma and used for RT-PCR with the Access RT-PCR System. (0396)

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J. Virol. 73, 3778-3788. Activation of caspases and p53 by bovine herpesvirus 1 infection results in programmed cell death and efficient virus release. 1999

Devireddy, L.R., Jones, C.J.

Notes: Total RNA was extracted from bovine herpesvirus 1-infected and -uninfected MDCK canine kidney, and CV-1 monkey kidney cell lines using the RNAgents® Total RNA Isolation System. The isolated RNA was used for RT-PCR. (1227)

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J. Immunol. 162, 871-877. Alternative splicing and hypermutation of a nonproductively rearranged TCR alpha-chain in a T cell hybridoma. 1999

Marshall, B., Schulz, R., Zhou, M., Mellor, A.

Notes: The Access RT-PCR System was used to amplify Vα1024 mRNA of the TCR alpha chain and the resulting product was cloned with the pGEM®-T Vector System. (0734)

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J. Bacteriol. 181, 4734–4740. An Unspliced Group I Intron in rRNA Links Chlamydiales, Chloroplasts and Mitochondria 1999

Everett, K.D., Kahane, S., Bush, R.M. and Friedman, M.G.

Notes: Total RNA was isolated from uninfected Vero cells and Vero cells infected with either Simkania negevensis ZT or Chlamydia trachmatis using the SV Total RNA Isolation System. The isolated RNA was used in RT-PCR amplifications to determine the size of the unspliced intron form of the 23S rRNA to differentiate between a group I intron where the rRNA intron is spliced with religation and an intervening segment where the rRNA is fragmented to functionally remove the intervening segments. The isolated RNAs and Promega's RNA Markers were separated by electrophoresis to judge RNA integrity. (2302)

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J. Biol. Chem. 274, 2271-2278. Antioxidant function of the mitochondrial protein SP-22 in the cardiovascular system. 1999

Araki, M., Nanri, H., Ejima, K., Murasato, Y., Fujiwara, T., Nakashima, Y. and Ikeda, M.

Notes: The authors used the Tfx™-50 Reagent to transfect bovine aortic endothelial cells. They also used the pGEM®-T Easy Vector System to clone PCR products. (1482)

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J. Immunol. 162, 1566-1572. Atypical VH-D-JH rearrangements in newborn autoimmune MRL mice. 1999

Klonowski, K.D., Primiano, L.L., Monestier, M.

Notes: Authors use the Wizard® Genomic DNA Purification Kit to isolate DNA from newborn mice livers. They performed nested PCR on V(H)-D-J(H) genes and cloned these into the pGEM®-T Vector and sequenced the rearrangements using the fmol® DNA Cycle Sequencing System. (0908)

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Am. J. Pathol. 155, 1977–1984. Basic fibroblast growth factor synthesis by human peritoneal mesothelial cells: Induction by interleukin-1. 1999

Cronauer, M.V., Stadlmann, S., Klocker, H., Abendstein, B., Eder, I.E., Rogatsch, H., Zeimet, A.G., Marth, C. and Offner, F.A.

Notes: The SV Total RNA Isolation System was used to isolate RNA from human peritoneal mesothelial cells. The isolated RNA was used for RT-PCR. (2164)

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J. Virol. 73, 8657-8668. Bovine herpesvirus 1 can infect CD4+ T lymphocytes and induce programmed cell death during acute infection of cattle. 1999

Winkler, M.T.C., Doster, A., Jones, C.

Notes: The RNAgents® Total RNA Isolation system was used to isolate total RNA from CD4+ and CD8+ T cells isolated from infected and uninfected cattle. The isolated RNA was used for RT-PCR. (0143)

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J. Virol. 73, 8160-8166. Bovine leukemia virus structural gene vectors are immunogenic and lack pathogenicity in a rabbit model. 1999

Kucerova, L., Altaverova, V., Altaner C., Boris-Lawrie, K.

Notes: The RNAgents® Total RNA Isolation System was used to isolate RNA from LPS-stimulated, bovine leukemia virus-infected peripheral blood mononuclear cells. The RNA was treated with DNase and used for RT-PCR with the Access RT-PCR System. One fiftieth of the reaction was used for nested PCR. (0855)

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J. Biol. Chem. 274, 35845-35854.. Brain actin-associated protein phosphatase 1 holoenzymes containing spinophilin, neurabin, and selected catalytic subunit isoforms. 1999

MacMillan, L.B., Bass, M.A., Cheng, N., Howard, E.F., Tamura, M., Strack, S., Wadzinski, B.E., Colbran, R.J.

Notes: The Access RT-PCR System was used to amplify messages for spinophilin and neurabin from rat brain total RNA. The products were used to make probes to screen a cDNA library. (0720)

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J. Biol. Chem. 274, 26537-26542. Characterization of a novel cis-element that regulates Fas ligand expression in corneal endothelial cells. 1999

Zhang, J., Ma, B., Marshak-Rothstein, A., Fine, A.

Notes: The Reverse Transcriptase System was used for two step RT-PCR. (0092)

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J. Biol. Chem. 274, 29510-29518. Characterization of the Shank family of synaptic proteins: Multiple genes, alternative splicing and differential expression in brain and development. 1999

Lim, S., Naisbitt, S., Yoon, J., Hwang, J.I., Suh, P.G., Sheng, M., Kim, E.

Notes: Total RNA was isolated from the cortex and cerebellum of adult and developing rat brains with the RNAgents® Total RNA Isolation System. RT-PCR was performed on a variety of samples with a variety of primers to assay alternative splicing. The Access RT-PCR System was used for all RT-PCR. (0764)

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J. Physiol. 519, 323–333. Cloning and functional expression of a novel degenerin-like Na+ channel gene in mammals. 1999

Sakai, H., Lingueglia, E., Champigny, G., Mattei, M.-G. and Lazdunski, M.

Notes: Taq DNA Polymerase was used extensively to clone the BLINaC cDNA. The resulting clone was put into the pCI Mammalian Expression Vector. Total RNA was isolated from rat liver and primary hepatocytes with the SV Total RNA Isolation System. The RNA was used for RT-PCR. Northern blotting was performed with poly-A(+) RNA isolated with the PolyATtract® mRNA Isolation System. (0472)

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J. Bacteriol. 181, 5355-5364. Comparative genetics of capsular polysaccharide biosynthesis in Streptococcus pneumoniae type belonging to serogroup 19. 1999

Morona, J.K., Morona, R., Paton, J.C.

Notes: The Wizard® Genomic DNA Purification Kit was used to isolate genomic DNA from S. pneumoniae with a slight modification to the standard protocol. The modification was the addition of 0.1% deoxycholate to the lysis solution followed by incubation for 10min. at 37°C. The isolated DNA was used for PCR. (0664)

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J. Immunol. 162, 1232-1235. Cutting edge: Coordinate regulation of IFN regulatory factor-1 and the polymeric Ig receptor by proinflammatory cytokines. 1999

Blanch, V.J., Piskurich, J.F., Kaetzel, C.S.

Notes: The authors used the Access RT-PCR System to perform quantitative RT-PCR from total RNA. (2239)

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J. Biol. Chem. 274, 8391-8404. Cyclic AMP- and Cyclic GMP-dependent protein kinases differ in their regulation of cyclic AMP response element-dependent gene transcription. 1999

Collins, S.P., Uhler, M.D.

Notes: The pSP73 Vector was used for routine subcloning. The pGEM®-T Vector System was used for subcloning of PCR products. (1320)

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