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Design Verification and Performance of the Maxwell® CSC Instrument and Reagents

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Abstract

Here we discuss the Maxwell® CSC Instrument and Maxwell® CSC Blood DNA Kit, the first products Promega developed and manufactured under current Good Manufacturing Practices (cGMP). These products are intended for use as clinical sample concentrators for in vitro diagnostic use in the US market. The instrument and reagent kit have undergone performance testing of DNA extraction consistency regardless of instrument, user or blood sample type. Cross-contamination and inhibitor studies verified the reliability of the purified DNA in assays like real-time PCR.

Gregg Cameron, Christine Newton, Mary Dressler, Cristopher Cowan and Jeff Franz

Promega Corporation

Publication Date: October 2012

Introduction

The Maxwell® CSC Instrument (Figure 1) and Maxwell® CSC Blood DNA Kit are the first products from Promega developed and manufactured under current Good Manufacturing Practices (cGMP). The products are intended for use as clinical sample concentrators for in vitro diagnostic use in the US market. The Maxwell® CSC Instrument offers a variety of features specifically tailored for the clinical laboratory, including availability of Installation Qualification (IQ)/Operational Qualification (OQ) services, multiple tiers of service and support packages, 21 CFR Part 11-compliant software, an integrated touch-screen tablet providing an easy-to-use graphical user interface, bar code reading and sample tracking capabilities, administrator-level instrument-specific and workflow-specific options, and reporting functionality. The new software platform for operating the Maxwell® CSC Instrument has a tailored user interface that suits the needs of the clinical laboratory. Selecting a protocol and keeping track of kit lot number and expiration date are as simple as scanning a bar code on the Maxwell® CSC reagent kit. Purification setup instructions within the software require users to confirm that they have performed all of the steps necessary for a sample processing run.

Figure 1. The Maxwell® CSC Instrument with touch-screen tablet PC interface and bar code reader.

Features of the system include availability of Installation Qualification/Operational Qualification Services, multiple service plan tiers, 21 CFR Part 11-compliant software, integrated touch-screen tablet with graphical user interface, bar code reading and sample tracking capabilities, a variety of administrator options, and reporting functionality.

Features of the system include availability of Installation Qualification/Operational Qualification Services, multiple service plan tiers, 21 CFR Part 11-compliant software, integrated touch-screen tablet with graphical user interface, bar code reading and sample tracking capabilities, a variety of administrator options, and reporting functionality.

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The first reagent kit available for the Maxwell® CSC Instrument is the Maxwell® CSC Blood DNA Kit. This new kit has undergone extensive testing to ensure reliable and reproducible DNA purification from whole blood samples when it is used with the Maxwell® CSC Instrument. We conducted cross-contamination studies to demonstrate that no detectable sample contamination occurs during processing, and inhibitor studies to show that amplification inhibitors do not copurify with the eluted DNA. This article describes some of the design verification and validation experiments performed during product development.

Sample Types

We designed the Maxwell® CSC Blood DNA Kit to purify DNA from human whole blood with a normal range of white blood cells (WBC; 4 × 106–10 × 106WBC/ml of blood) in the anticoagulant blood collection tubes most commonly used in clinics: EDTA, heparin and sodium citrate. Figure 2 shows the yield and average purity of nucleic acid purified from eight replicate 300μl blood samples from a single donor collected using different blood anticoagulant tubes and purified using the Maxwell® CSC Blood DNA Kit. Together, these data demonstrate that the Maxwell® CSC Blood DNA Kit provides reproducible yield and purity from samples collected in the common anticoagulant blood tubes tested.

Figure 2. Extraction results from commonly used blood collection tubes.

Eight 300µl replicates from the same blood sample were processed from each blood collection tube type using the Maxwell® CSC Blood DNA Kit on the Maxwell® CSC Instrument. Panel A. Average genomic DNA yield per white blood cell number for each type of anticoagulant collection tube tested is shown. Panel B. Average A260/A280 and A260/A230 purity ratios are displayed for each type of blood collection tube tested.

Eight 300µl replicates from the same blood sample were processed from each blood collection tube type using the Maxwell® CSC Blood DNA Kit on the Maxwell® CSC Instrument. Panel A. Average genomic DNA yield per white blood cell number for each type of anticoagulant collection tube tested is shown. Panel B. Average A260/A280 and A260/A230 purity ratios are displayed for each type of blood collection tube tested.

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We designed the Maxwell® CSC Blood DNA Kit to work with blood sample volumes of 50–300µl. Figure 3 shows the linearity of DNA yield across this range. In addition, we tested the ability of the Maxwell® CSC Blood DNA Kit to purify DNA from blood samples stored up to 72 hours at ambient temperature, up to 7 days at 4°C, or frozen at –80°C and thawed at room temperature with mixing before extraction. We found that blood stored under these three conditions produced comparable DNA yields and purities when processed with the Maxwell® CSC Blood DNA Kit (Figure 4).

Figure 3. DNA yield is directly proportional to input blood volume.

DNA was purified from 50, 100, 200 and 300µl of whole blood from a single donor using the Maxwell® CSC Blood DNA Kit. The average yield of genomic DNA was plotted versus blood volume and is linear across the blood sample volumes tested.

DNA was purified from 50, 100, 200 and 300µl of whole blood from a single donor using the Maxwell® CSC Blood DNA Kit. The average yield of genomic DNA was plotted versus blood volume and is linear across the blood sample volumes tested.

//embed.widencdn.net/img/promega/nquvepdi67/640px/11067MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 4. Effect of blood storage conditions on DNA extraction.

Aliquots of blood from a single donor were stored under three conditions prior to extraction: 3 days at ambient temperature, 7 days at 4°C or frozen at –80°C and thawed at ambient temperature with mixing. Eight 300μl replicate blood samples from each storage condition were purified using the Maxwell® CSC Blood DNA Kit. Panel A. Yield per white blood cell number for each sample. Panel B. DNA purity ratios obtained from each storage condition.

Aliquots of blood from a single donor were stored under three conditions prior to extraction: 3 days at ambient temperature, 7 days at 4°C or frozen at –80°C and thawed at ambient temperature with mixing. Eight 300μl replicate blood samples from each storage condition were purified using the Maxwell® CSC Blood DNA Kit. Panel A. Yield per white blood cell number for each sample. Panel B. DNA purity ratios obtained from each storage condition.

//embed.widencdn.net/img/promega/p9hj3w5ncr/640px/11122MA.jpeg?keep=c&crop=yes&u=7fvzhm

Consistency

Multiple analysts are often responsible for processing blood samples within a single laboratory. For this reason, we evaluated the consistency of DNA extraction over multiple days, multiple instruments and by multiple operators using blood from a single donor. Over a five-day period, a single user processed eight replicates per day of the same frozen blood sample to assess the consistency of extraction. The results of this multiple-day testing were comparable for yield and purity (Figure 5). We also tested the consistency of extraction performance when using three different Maxwell® CSC Instruments, and in a separate experiment, we assessed DNA extraction consistency among three different users. Again we found reproducible yield and purity for each of the three instruments tested (Figure 6) as well as each of the three analysts (data not shown). Together these results indicate that the Maxwell® CSC System provides consistent performance over multiple days, multiple instruments and multiple operators.

Figure 5. Yield and purity obtained from replicate samples from the same donor processed by a single analyst over multiple days.

The average DNA yield (Panel A) and purity ratios (Panel B) are consistent when DNA is extracted over multiple consecutive days from 300µl replicates of the same frozen whole blood sample (stored at –80°C) by a single analyst.

The average DNA yield (Panel A) and purity ratios (Panel B) are consistent when DNA is extracted over multiple consecutive days from 300µl replicates of the same frozen whole blood sample (stored at –80°C) by a single analyst.

//embed.widencdn.net/img/promega/x6yqkahq6y/640px/11068MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 6. Instrument variability.

Three different Maxwell® CSC Instruments were used to isolate DNA from eight replicate 300µl aliquots of the same frozen human whole blood sample (stored at –80°C) using the Maxwell® CSC Blood DNA Kit. Panel A. Average DNA yield. Panel B. Average purity ratios.

Three different Maxwell® CSC Instruments were used to isolate DNA from eight replicate 300µl aliquots of the same frozen human whole blood sample (stored at –80°C) using the Maxwell® CSC Blood DNA Kit. Panel A. Average DNA yield. Panel B. Average purity ratios.

//embed.widencdn.net/img/promega/pmwqcdylrx/640px/11069MA.jpeg?keep=c&crop=yes&u=7fvzhm

Cross-Contamination

Whether samples are processed manually or with an automated system, one of the main concerns of any laboratory is ensuring that there is no cross-contamination between samples. We assessed cross-contamination by dispensing water and blood samples in alternating Maxwell® CSC Blood DNA Kit cartridges that were processed in the Maxwell® CSC Instrument. The eluted DNA was analyzed using real-time PCR to quantitate picogram amounts of human genomic DNA. Triplicate amplifications of each eluate from the water sample cartridges were tested and showed no detectable human genomic DNA contamination. This indicated that there was no cross-contamination of samples during processing with the Maxwell® CSC Instrument (Table 1).

11059LATable 1. Cross-Contamination Testing.

Average amplification threshold (Ct) values obtained with real-time PCR for all blood and water samples used for the cross-contamination testing of the Maxwell® CSC System. The lowest concentration on the standard curve was 3.2pg/µl with an average Ct value of 34.8.

Average amplification threshold (Ct) values obtained with real-time PCR for all blood and water samples used for the cross-contamination testing of the Maxwell® CSC System. The lowest concentration on the standard curve was 3.2pg/µl with an average Ct value of 34.8.

https://promega.media/-/media/images/resources/tables/11000-11099/11059la.jpg?la=en

Quality Assurance

Each lot of Maxwell® CSC Blood DNA Kits is functionally tested during quality control and must meet a stringent set of performance requirements. During testing, 15 replicate 300µl samples of whole blood and one water sample are processed in 16 Maxwell® CSC Blood DNA Kit cartridges with the kit reagents provided for that lot. The DNA is purified on a Maxwell® CSC Instrument with a final elution volume of 50μl. The eluates are assessed using absorbance, and the minimum acceptable concentration is 80ng/µl with purity values required to be A260/A280 > 1.7 and A260/A230 > 1.5 for each replicate.

Performance

During design verification and validation testing, we assessed the performance of the Maxwell® CSC Blood DNA Kit and the Maxwell® CSC Instrument. The Maxwell® CSC Blood DNA Kit will typically yield 150–400ng/μl of DNA with absorbance purity ratios of A260/A280 = 1.85–1.95 and A260/A230 = 1.9–2.2 from 300µl of whole blood (4 × 106–10 × 106WBC/ml of blood) and an elution volume of 50μl.

Summary

With a small footprint, easy-to-use interface, sample-tracking and reporting features, cGMP manufacture and 21 CFR Part 11-compliant software, the Maxwell® CSC Instrument is an ideal extraction robot for the clinical laboratory. The Maxwell® CSC Blood DNA Kit offers laboratories a reliable chemistry that performs consistently across a range of sample and elution volumes, works with common anticoagulant blood collection tube types and provides DNA samples free from cross-contamination with minimal instrument-to-instrument and day-to-day variability. Together, the Maxwell® CSC Blood DNA Kit and Maxwell® CSC Instrument constitute a reliable and consistent platform for extracting genomic DNA from human whole blood samples for use in amplification-based diagnostic assays. While the Maxwell® CSC Blood DNA Kit is our first cGMP-compliant reagent kit, additional Maxwell® CSC reagent kits specifically designed to address the needs of the clinical laboratory are being developed.

How to Cite This Article

Cameron G, Newton C, Dressler M, Cowan C and Franz J Design Verification and Performance of the Maxwell® CSC Instrument and Reagents. [Internet] October 2012. [cited: year, month, date]. Available from: http://www.promega.com/resources/pubhub/design-verification-and-performance-of-the-maxwell-csc-instrument-and-reagents/

Cameron G, Newton C, Dressler M, Cowan C and Franz J Design Verification and Performance of the Maxwell® CSC Instrument and Reagents. Promega Corporation Web site. http://www.promega.com/resources/pubhub/design-verification-and-performance-of-the-maxwell-csc-instrument-and-reagents/ Updated October 2012. Accessed Month Day, Year.

Figures

Figure 1. The Maxwell® CSC Instrument with touch-screen tablet PC interface and bar code reader.

Features of the system include availability of Installation Qualification/Operational Qualification Services, multiple service plan tiers, 21 CFR Part 11-compliant software, integrated touch-screen tablet with graphical user interface, bar code reading and sample tracking capabilities, a variety of administrator options, and reporting functionality.

Features of the system include availability of Installation Qualification/Operational Qualification Services, multiple service plan tiers, 21 CFR Part 11-compliant software, integrated touch-screen tablet with graphical user interface, bar code reading and sample tracking capabilities, a variety of administrator options, and reporting functionality.

//embed.widencdn.net/img/promega/zj3tgnbcbq/640px/10762TA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 2. Extraction results from commonly used blood collection tubes.

Eight 300µl replicates from the same blood sample were processed from each blood collection tube type using the Maxwell® CSC Blood DNA Kit on the Maxwell® CSC Instrument. Panel A. Average genomic DNA yield per white blood cell number for each type of anticoagulant collection tube tested is shown. Panel B. Average A260/A280 and A260/A230 purity ratios are displayed for each type of blood collection tube tested.

Eight 300µl replicates from the same blood sample were processed from each blood collection tube type using the Maxwell® CSC Blood DNA Kit on the Maxwell® CSC Instrument. Panel A. Average genomic DNA yield per white blood cell number for each type of anticoagulant collection tube tested is shown. Panel B. Average A260/A280 and A260/A230 purity ratios are displayed for each type of blood collection tube tested.

//embed.widencdn.net/img/promega/0xfwone2j4/640px/11066MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 3. DNA yield is directly proportional to input blood volume.

DNA was purified from 50, 100, 200 and 300µl of whole blood from a single donor using the Maxwell® CSC Blood DNA Kit. The average yield of genomic DNA was plotted versus blood volume and is linear across the blood sample volumes tested.

DNA was purified from 50, 100, 200 and 300µl of whole blood from a single donor using the Maxwell® CSC Blood DNA Kit. The average yield of genomic DNA was plotted versus blood volume and is linear across the blood sample volumes tested.

//embed.widencdn.net/img/promega/nquvepdi67/640px/11067MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 4. Effect of blood storage conditions on DNA extraction.

Aliquots of blood from a single donor were stored under three conditions prior to extraction: 3 days at ambient temperature, 7 days at 4°C or frozen at –80°C and thawed at ambient temperature with mixing. Eight 300μl replicate blood samples from each storage condition were purified using the Maxwell® CSC Blood DNA Kit. Panel A. Yield per white blood cell number for each sample. Panel B. DNA purity ratios obtained from each storage condition.

Aliquots of blood from a single donor were stored under three conditions prior to extraction: 3 days at ambient temperature, 7 days at 4°C or frozen at –80°C and thawed at ambient temperature with mixing. Eight 300μl replicate blood samples from each storage condition were purified using the Maxwell® CSC Blood DNA Kit. Panel A. Yield per white blood cell number for each sample. Panel B. DNA purity ratios obtained from each storage condition.

//embed.widencdn.net/img/promega/p9hj3w5ncr/640px/11122MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 5. Yield and purity obtained from replicate samples from the same donor processed by a single analyst over multiple days.

The average DNA yield (Panel A) and purity ratios (Panel B) are consistent when DNA is extracted over multiple consecutive days from 300µl replicates of the same frozen whole blood sample (stored at –80°C) by a single analyst.

The average DNA yield (Panel A) and purity ratios (Panel B) are consistent when DNA is extracted over multiple consecutive days from 300µl replicates of the same frozen whole blood sample (stored at –80°C) by a single analyst.

//embed.widencdn.net/img/promega/x6yqkahq6y/640px/11068MA.jpeg?keep=c&crop=yes&u=7fvzhm
Figure 6. Instrument variability.

Three different Maxwell® CSC Instruments were used to isolate DNA from eight replicate 300µl aliquots of the same frozen human whole blood sample (stored at –80°C) using the Maxwell® CSC Blood DNA Kit. Panel A. Average DNA yield. Panel B. Average purity ratios.

Three different Maxwell® CSC Instruments were used to isolate DNA from eight replicate 300µl aliquots of the same frozen human whole blood sample (stored at –80°C) using the Maxwell® CSC Blood DNA Kit. Panel A. Average DNA yield. Panel B. Average purity ratios.

//embed.widencdn.net/img/promega/pmwqcdylrx/640px/11069MA.jpeg?keep=c&crop=yes&u=7fvzhm

Tables

11059LATable 1. Cross-Contamination Testing.

Average amplification threshold (Ct) values obtained with real-time PCR for all blood and water samples used for the cross-contamination testing of the Maxwell® CSC System. The lowest concentration on the standard curve was 3.2pg/µl with an average Ct value of 34.8.

Average amplification threshold (Ct) values obtained with real-time PCR for all blood and water samples used for the cross-contamination testing of the Maxwell® CSC System. The lowest concentration on the standard curve was 3.2pg/µl with an average Ct value of 34.8.

https://promega.media/-/media/images/resources/tables/11000-11099/11059la.jpg?la=en