qPCR and qRT-PCR Technical Resources

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Decreasing fluorescence associated with Plexor(TM) Systems The Plexor® qPCR and qRT-PCR Systems take advantage of the specific interaction between two modified nucleotides to achieve quantitative PCR analysis. One of the PCR primers contains a fluorescent label adjacent to an iso-dC residue at the 5′ terminus. The second PCR primer is unlabeled. The reaction mix includes deoxynucleotides and iso-dGTP modified with the quencher dabcyl. Dabcyl-iso-dGTP is preferentially incorporated at the position complementary to the iso-dC residue. The incorporation of the dabcyl-iso-dGTP at this position results in quenching of the fluorescent dye on the complementary strand and a reduction in fluorescence, which allows quantitation during amplification. For these multiplex reactions, a primer pair with a different fluorophore is used for each target sequence.

The Plexor® technology is licensed from EraGen Biosciences.

Plexor® Technical Tools

Plexor® Primer Design Overview and Software Instrumentation Overview and Information Data Analysis Overview and Tools

Plexor® Application Notes

The Plexor® Application Notes provide extensive information about the Plexor® technology and its application. You can download the entire collection (pdf, 1.1 MB) or only the articles of your choice by selecting the appropriate link below:

An Introduction to the Plexor® Systems (pdf, 132kb) A New Chemistry for Real-Time PCR (pdf, 278kb) Multiplex Reactions for SNP Detection (pdf, 238kb) Plexor® Technology vs. SYBR® Green (pdf, 162kb) Plexor® vs. TaqMan® Assays (pdf, 148kb) Using the Plexor® Primer Design Software (pdf, 173kb) Validation of the Plexor® Primer Design Software (pdf, 240kb) The Plexor® Analysis Software (pdf, 268kb)