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Restriction Enzymes Resource

3.6 Methylation Sensitivity of Isoschizomer/Neoschizomer Pairs

Heat-inactivation of restriction enzymes may be performed when a subsequent reaction can be performed in the same reaction buffer, or when the reaction will be diluted for the next application. This will eliminate the need for extra ethanol precipitations or clean-up steps. Table 3.4 lists the sensitivity of Promega's restriction enzymes to heat-inactivation.

Isoschizomers and neoschizomers often differ in their sensitivity to methylation. This can be a simple way to differentiate the methylation state of DNA. Iso/neoschizomer pairs sold by Promega are listed below.

Table 3.6 Methylation Sensitivity of Iso/Neoschizomer Pairs.

Methylated Sequence

Cleaved by

Not Cleaved by

m4CCGG Msp I (C/CGG) Hpa II (C/CGG)
Cm5CGG Msp I (C/CGG) Hpa II (C/CGG)
Cm4CGG Msp I (C/CGG) Hpa II (C/CGG)
CCm5CGGG Xma I (C/CCGGG) Sma I (CCC/GGG)
Gm6ATC Sau3A I (/GATC) Mbo I, Nde II (/GATC)
GATm5C Mbo I, Nde II (/GATC) Sau3A I (/GATC)
GATm4C Mbo I (/GATC) Sau3A I (/GATC)
GGTACm5C Kpn I (GGTAC/C) Acc65 I (G/GTACC)


Reference

McClelland, M., Nelson, M. and Raschke, E. (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucl. Acids Res. 22, 3640.

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