3.6 Methylation Sensitivity of Isoschizomer/Neoschizomer
Pairs
Heat-inactivation of restriction enzymes may be performed when a subsequent reaction
can be performed in the same reaction buffer, or when the reaction will be diluted for the
next application. This will eliminate the need for extra ethanol precipitations or
clean-up steps. Table 3.4 lists the sensitivity of Promega's restriction enzymes to
heat-inactivation.
Isoschizomers and neoschizomers often differ in their sensitivity
to methylation. This can be a simple way to differentiate the methylation state of DNA.
Iso/neoschizomer pairs sold by Promega are listed below.
Table 3.6 Methylation
Sensitivity of Iso/Neoschizomer Pairs.
|
Methylated
Sequence |
Cleaved by |
Not Cleaved by |
| m4CCGG |
Msp I (C/CGG) |
Hpa II (C/CGG) |
| Cm5CGG |
Msp I (C/CGG) |
Hpa II (C/CGG) |
| Cm4CGG |
Msp I (C/CGG) |
Hpa II (C/CGG) |
| CCm5CGGG |
Xma I (C/CCGGG) |
Sma I (CCC/GGG) |
| Gm6ATC |
Sau3A I (/GATC) |
Mbo I, Nde II (/GATC) |
| GATm5C |
Mbo I, Nde II (/GATC) |
Sau3A I (/GATC) |
| GATm4C |
Mbo I (/GATC) |
Sau3A I (/GATC) |
| GGTACm5C |
Kpn I (GGTAC/C) |
Acc65 I (G/GTACC) |
Reference
McClelland, M., Nelson, M. and Raschke, E. (1994) Effect of site-specific modification
on restriction endonucleases and DNA modification methyltransferases. Nucl. Acids Res.
22, 3640. |
|